EnhancerDB
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  3. rs549659368[chr6:16712946]
Enhancers that have rs549659368[chr6:16712946]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 16667585 16734115 enh23080
Liver Astrocyte Colon (HCT116) Adrenal Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr6 16712557 16713382 vista51170
VISTA
Transcript factors that have rs549659368[chr6:16712946]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 16712934 16712955 IRF1 JASPAR yes 70326863
chr6 16712934 16712955 IRF1 JASPAR yes 100331610
chr6 16712938 16712950 IRF1 JASPAR yes 70326864
chr6 16712938 16712950 IRF1 JASPAR yes 100331611
chr6 16712940 16712961 IRF1 JASPAR yes 70326865
chr6 16712940 16712961 IRF1 JASPAR yes 100331612
chr6 16712942 16712957 STAT2 JASPAR yes 70326866
chr6 16712942 16712957 STAT2 JASPAR yes 100331613
chr6 16712942 16712963 IRF1 JASPAR yes 70326867
chr6 16712942 16712963 IRF1 JASPAR yes 100331614
chr6 16712943 16712964 IRF1 JASPAR yes 70326868
chr6 16712943 16712964 IRF1 JASPAR yes 100331615
chr6 16712944 16712965 IRF1 JASPAR yes 70326869
chr6 16712944 16712965 IRF1 JASPAR yes 100331616
chr6 16712945 16712960 FOXP1 JASPAR yes 70326870
chr6 16712945 16712960 FOXP1 JASPAR yes 100331617
chr6 16712946 16712961 FOXP1 JASPAR yes 70326871
chr6 16712946 16712961 FOXP1 JASPAR yes 100331618
Genes associated with rs549659368[chr6:16712946], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More