EnhancerDB
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  3. rs549754579[chr1:27780472]
Enhancers that have rs549754579[chr1:27780472]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 27742945 27784244 enh174
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs549754579[chr1:27780472]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 27780459 27780477 IRF2 JASPAR yes 27696313
chr1 27780467 27780472 ETS2 TRANSFAC yes 27696314
chr1 27780472 27780477 GATA2 JASPAR yes 27696315
chr1 27780472 27780487 MEF2C JASPAR yes 27696316
Genes associated with rs549754579[chr1:27780472], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More