EnhancerDB
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  3. rs549964588[chr16:85280155]
Enhancers that have rs549964588[chr16:85280155]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 85219145 85290912 enh16864
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs549964588[chr16:85280155]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 85279300 85280502 ZNF143 GTRD no Epithelial (MCF-7) 21721992
chr16 85279617 85280340 ZNF274 GTRD no Bone Marrow (K562) 21722015
chr16 85279730 85280278 TCF7L2 GTRD no Colon (HCT116) 21722016
chr16 85279991 85280301 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21722017
chr16 85279993 85280349 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21722018
chr16 85280039 85280295 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21722019
chr16 85280143 85280155 NHLH1 JASPAR yes 12038168
Genes associated with rs549964588[chr16:85280155], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More