EnhancerDB
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  3. rs550018954[chr2:238619281]
Enhancers that have rs550018954[chr2:238619281]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 238592145 238619475 enh19401
Astrocyte Pancreas Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs550018954[chr2:238619281]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 238619268 238619283 NFYB JASPAR yes 82135639
chr2 238619270 238619286 NFYA JASPAR yes 82135641
chr2 238619271 238619289 NFYA JASPAR yes 82135642
chr2 238619272 238619282 PAX3 JASPAR yes 82135644
chr2 238619272 238619282 PAX7 JASPAR yes 82135645
chr2 238619274 238619283 VENTX JASPAR yes 82135646
chr2 238619274 238619284 ALX3 JASPAR yes 82135647
chr2 238619274 238619284 ESX1 JASPAR yes 82135648
chr2 238619274 238619284 GBX1 JASPAR yes 82135649
chr2 238619274 238619284 GBX2 JASPAR yes 82135650
chr2 238619274 238619284 GSX1 JASPAR yes 82135651
chr2 238619274 238619284 GSX2 JASPAR yes 82135652
chr2 238619274 238619284 HESX1 JASPAR yes 82135653
chr2 238619274 238619284 HOXB3 JASPAR yes 82135654
chr2 238619274 238619284 LBX2 JASPAR yes 82135655
chr2 238619274 238619284 LHX2 JASPAR yes 82135656
chr2 238619274 238619284 MIXL1 JASPAR yes 82135657
chr2 238619274 238619284 RAX JASPAR yes 82135658
chr2 238619275 238619283 BARX1 JASPAR yes 82135662
chr2 238619275 238619283 BSX JASPAR yes 82135663
chr2 238619275 238619283 EN1 JASPAR yes 82135664
chr2 238619275 238619283 ISX JASPAR yes 82135665
chr2 238619275 238619283 LHX9 JASPAR yes 82135666
chr2 238619275 238619283 MSX1 JASPAR yes 82135667
chr2 238619275 238619283 MSX2 JASPAR yes 82135668
chr2 238619275 238619283 PRRX1 JASPAR yes 82135669
chr2 238619275 238619283 RAX2 JASPAR yes 82135670
chr2 238619275 238619283 SHOX JASPAR yes 82135671
chr2 238619281 238619295 ONECUT1 JASPAR yes 82135672
chr2 238619281 238619295 ONECUT2 JASPAR yes 82135673
chr2 238619281 238619295 ONECUT3 JASPAR yes 82135674
Genes associated with rs550018954[chr2:238619281], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More