EnhancerDB
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  3. rs550054261[chr19:13954409]
Enhancers that have rs550054261[chr19:13954409]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 13941465 13967615 enh5016
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr19 13954357 13954714 vista28718
VISTA
Transcript factors that have rs550054261[chr19:13954409]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 13948875 13955635 POLR2A UCSC Txn Factor no Conserved 108390133
chr19 13948875 13955635 POLR2A UCSC Txn Factor no Conserved 108390134
chr19 13951838 13954705 TCF7L2 GTRD no Colon (HCT116) 21851938
chr19 13951838 13954705 TCF7L2 GTRD no Colon (HCT116) 108390135
chr19 13951887 13954603 TCF7L2 GTRD no Colon (HCT116) 21851957
chr19 13951887 13954603 TCF7L2 GTRD no Colon (HCT116) 108390136
chr19 13951893 13954672 TCF7L2 GTRD no Colon (HCT116) 21851961
chr19 13951893 13954672 TCF7L2 GTRD no Colon (HCT116) 108390137
chr19 13951936 13954470 TCF7L2 GTRD no Colon (HCT116) 21851976
chr19 13951936 13954470 TCF7L2 GTRD no Colon (HCT116) 108390138
chr19 13952866 13954773 ZNF143 GTRD no Epithelial (MCF-7) 21852081
chr19 13952866 13954773 ZNF143 GTRD no Epithelial (MCF-7) 108390139
chr19 13952881 13954705 ZNF143 GTRD no Epithelial (MCF-7) 21852085
chr19 13952881 13954705 ZNF143 GTRD no Epithelial (MCF-7) 108390140
chr19 13952890 13954784 ZNF143 GTRD no Epithelial (MCF-7) 21852086
chr19 13952890 13954784 ZNF143 GTRD no Epithelial (MCF-7) 108390141
chr19 13953024 13954807 ZNF143 GTRD no Epithelial (MCF-7) 21852107
chr19 13953024 13954807 ZNF143 GTRD no Epithelial (MCF-7) 108390142
chr19 13953684 13954622 TCF7L2 GTRD no Colon (HCT116) 21852197
chr19 13953684 13954622 TCF7L2 GTRD no Colon (HCT116) 108390144
chr19 13954094 13954644 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21852203
chr19 13954094 13954644 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108390145
chr19 13954267 13954637 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21852204
chr19 13954267 13954637 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108390146
chr19 13954294 13954770 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21852205
chr19 13954294 13954770 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108390147
chr19 13954301 13954610 STAT3 UCSC Txn Factor no Conserved 108390148
chr19 13954330 13954726 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21852206
chr19 13954330 13954726 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108390149
chr19 13954330 13954794 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21852207
chr19 13954330 13954794 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 108390150
chr19 13954331 13954795 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21852208
chr19 13954331 13954795 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108390151
chr19 13954333 13954863 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21852209
chr19 13954333 13954863 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108390152
chr19 13954340 13954836 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21852210
chr19 13954340 13954836 TCF7L2 UCSC Txn Factor no Conserved 108390153
chr19 13954340 13954836 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108390154
chr19 13954360 13954764 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21852211
chr19 13954360 13954764 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108390155
chr19 13954383 13954767 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21852212
chr19 13954383 13954767 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108390156
chr19 13954392 13954410 ESR2 JASPAR yes 70810264
chr19 13954392 13954410 ESR2 JASPAR yes 112537209
chr19 13954394 13954409 ESR2 JASPAR yes 70810265
chr19 13954394 13954409 ESR2 JASPAR yes 112537210
chr19 13954394 13954414 ESR1 JASPAR yes 70810266
chr19 13954394 13954414 ESR1 JASPAR yes 112537211
chr19 13954404 13954410 SP1 TRANSFAC yes 70810268
chr19 13954404 13954410 SP1 TRANSFAC yes 112537213
chr19 13954404 13954414 SP1 JASPAR yes 70810269
chr19 13954404 13954414 SP1 JASPAR yes 112537214
chr19 13954407 13954417 MZF1 JASPAR yes 70810270
chr19 13954407 13954417 MZF1 JASPAR yes 112537215
Genes associated with rs550054261[chr19:13954409], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More