EnhancerDB
  1. Home
  2. SNP
  3. rs550054538[chr6:42296079]
Enhancers that have rs550054538[chr6:42296079]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 42275585 42296471 enh9113
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Ovary Bone (Osteoblast) Lung (A549) Stomach Colon (HCT116) Uterus Blood (Karpas-422) Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Neural Stem Cells (H9) Blood (T-cell) Heart
Transcript factors that have rs550054538[chr6:42296079]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 42296062 42296082 RREB1 JASPAR yes 101709600
chr6 42296063 42296083 RREB1 JASPAR yes 101709602
chr6 42296066 42296086 RREB1 JASPAR yes 101709603
chr6 42296067 42296079 FOXI1 JASPAR yes 101709604
chr6 42296067 42296087 RREB1 JASPAR yes 101709605
chr6 42296068 42296083 FOXP1 JASPAR yes 101709606
chr6 42296070 42296090 RREB1 JASPAR yes 101709607
chr6 42296071 42296083 FOXI1 JASPAR yes 101709608
chr6 42296071 42296091 RREB1 JASPAR yes 101709609
chr6 42296076 42296091 FOXP1 JASPAR yes 101709610
Genes associated with rs550054538[chr6:42296079], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More