EnhancerDB
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  3. rs550090123[chr1:39866165]
Enhancers that have rs550090123[chr1:39866165]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 39853990 39867590 enh11763
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Kidney Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs550090123[chr1:39866165]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 39866150 39866171 IRF1 JASPAR yes 28273808
chr1 39866153 39866168 FOXP1 JASPAR yes 28273809
chr1 39866154 39866169 FOXP1 JASPAR yes 28273810
chr1 39866155 39866170 FOXP1 JASPAR yes 28273811
chr1 39866156 39866171 FOXP1 JASPAR yes 28273812
chr1 39866156 39866177 IRF1 JASPAR yes 28273813
chr1 39866157 39866170 POU2F2 JASPAR yes 28273814
chr1 39866160 39866172 IRF1 JASPAR yes 28273815
chr1 39866160 39866174 IRF7 JASPAR yes 28273816
chr1 39866165 39866169 YY1 TRANSFAC yes 28273817
Genes associated with rs550090123[chr1:39866165], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More