EnhancerDB
  1. Home
  2. SNP
  3. rs550123850[chr1:39606170]
Enhancers that have rs550123850[chr1:39606170]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 39588469 39628695 enh11759
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs550123850[chr1:39606170]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 39606132 39607756 TCF7L2 GTRD no Colon (HCT116) 107802891
chr1 39606168 39606174 HiNF-A TRANSFAC yes 28257044
Genes associated with rs550123850[chr1:39606170], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More