EnhancerDB
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  3. rs550216320[chr1:33455304]
Enhancers that have rs550216320[chr1:33455304]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 33442929 33472683 enh216
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Prostate (RWPE1) Heart
chr1 33454783 33455472 vista1136
VISTA
Transcript factors that have rs550216320[chr1:33455304]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 33455289 33455304 FOXP1 JASPAR yes 28019936
chr1 33455289 33455304 FOXP1 JASPAR yes 118269330
chr1 33455289 33455310 IRF1 JASPAR yes 28019937
chr1 33455289 33455310 IRF1 JASPAR yes 118269331
chr1 33455290 33455305 FOXP1 JASPAR yes 28019938
chr1 33455290 33455305 FOXP1 JASPAR yes 118269332
chr1 33455293 33455308 STAT2 JASPAR yes 28019939
chr1 33455293 33455308 STAT2 JASPAR yes 118269333
chr1 33455304 33455313 NKX3-2 JASPAR yes 28019940
chr1 33455304 33455313 NKX3-2 JASPAR yes 118269334
chr1 33455304 33455314 NKX2-3 JASPAR yes 28019941
chr1 33455304 33455314 NKX2-3 JASPAR yes 118269335
Genes associated with rs550216320[chr1:33455304], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More