EnhancerDB
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  3. rs550272246[chr17:43249569]
Enhancers that have rs550272246[chr17:43249569]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 43246305 43256255 enh4426
Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Lung Muscle (A673)
Transcript factors that have rs550272246[chr17:43249569]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 43247783 43250788 POLR2A UCSC Txn Factor no Conserved 108263878
chr17 43248970 43249620 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21763200
chr17 43249303 43249673 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21763201
chr17 43249334 43249710 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21763202
chr17 43249370 43249716 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21763203
chr17 43249533 43250033 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108263879
chr17 43249549 43249569 RREB1 JASPAR yes 54432817
chr17 43249552 43249572 RREB1 JASPAR yes 54432819
chr17 43249555 43249575 RREB1 JASPAR yes 54432820
chr17 43249566 43249571 SP1 TRANSFAC yes 54432821
Genes associated with rs550272246[chr17:43249569], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More