EnhancerDB
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  3. rs550288771[chr1:117422205]
Enhancers that have rs550288771[chr1:117422205]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 117411045 117431652 enh12190
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Kidney Stomach Skin (Keratinocyte) Epithelial (MCF-7) Brain (SK-N-SH) Thyroid Neural Stem Cells (H9) Thymus Large Intestine Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung
Transcript factors that have rs550288771[chr1:117422205]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 117421581 117422257 KAP1 UCSC Txn Factor no Conserved 107825114
chr1 117421750 117422474 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21334054
chr1 117421750 117422474 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107825120
chr1 117421750 117422474 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107825121
chr1 117422158 117422348 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21334060
chr1 117422189 117422761 ZNF143 GTRD no Epithelial (MCF-7) 21334061
chr1 117422189 117422761 ZNF143 GTRD no Epithelial (MCF-7) 107825127
chr1 117422194 117422212 NFYA JASPAR yes 31848090
chr1 117422202 117422207 NFY TRANSFAC yes 31848091
chr1 117422204 117422210 NFIC JASPAR yes 31848092
Genes associated with rs550288771[chr1:117422205], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More