EnhancerDB
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  3. rs550378071[chr1:234668090]
Enhancers that have rs550378071[chr1:234668090]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 234649189 234693444 enh991
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs550378071[chr1:234668090]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 234667569 234668711 ZNF274 GTRD no Blood (GM12878) 107880337
chr1 234667722 234668579 ZNF274 GTRD no Blood (GM12878) 107880338
chr1 234667737 234668977 ZNF143 GTRD no Epithelial (MCF-7) 21394101
chr1 234667737 234668977 ZNF143 GTRD no Epithelial (MCF-7) 107880339
chr1 234667737 234668977 ZNF143 GTRD no Epithelial (MCF-7) 107880340
chr1 234667876 234668876 ZNF143 GTRD no Epithelial (MCF-7) 21394102
chr1 234667876 234668876 ZNF143 GTRD no Epithelial (MCF-7) 107880341
chr1 234667876 234668876 ZNF143 GTRD no Epithelial (MCF-7) 107880342
chr1 234667896 234668771 ZNF143 GTRD no Epithelial (MCF-7) 21394103
chr1 234667896 234668771 ZNF143 GTRD no Epithelial (MCF-7) 107880343
chr1 234668014 234668933 ZNF143 GTRD no Epithelial (MCF-7) 21394104
chr1 234668014 234668933 ZNF143 GTRD no Epithelial (MCF-7) 107880344
chr1 234668014 234668933 ZNF143 GTRD no Epithelial (MCF-7) 107880345
chr1 234668025 234668698 ZNF143 GTRD no Epithelial (MCF-7) 21394105
chr1 234668025 234668698 ZNF143 GTRD no Epithelial (MCF-7) 107880346
chr1 234668032 234668673 ZNF143 GTRD no Epithelial (MCF-7) 21394106
chr1 234668032 234668673 ZNF143 GTRD no Epithelial (MCF-7) 107880347
chr1 234668046 234668662 ZNF143 GTRD no Epithelial (MCF-7) 21394107
chr1 234668046 234668662 ZNF143 GTRD no Epithelial (MCF-7) 107880348
chr1 234668046 234668793 ZNF143 GTRD no Epithelial (MCF-7) 21394108
chr1 234668046 234668793 ZNF143 GTRD no Epithelial (MCF-7) 107880349
chr1 234668048 234668770 ZNF143 GTRD no Epithelial (MCF-7) 21394109
chr1 234668048 234668770 ZNF143 GTRD no Epithelial (MCF-7) 107880350
chr1 234668054 234668714 ZNF143 GTRD no Epithelial (MCF-7) 21394110
chr1 234668054 234668714 ZNF143 GTRD no Epithelial (MCF-7) 107880351
chr1 234668069 234668090 ZNF263 JASPAR yes 36284664
chr1 234668069 234668679 ZNF143 GTRD no Epithelial (MCF-7) 21394111
chr1 234668069 234668679 ZNF143 GTRD no Epithelial (MCF-7) 107880352
chr1 234668071 234668653 ZNF143 GTRD no Epithelial (MCF-7) 21394112
chr1 234668071 234668653 ZNF143 GTRD no Epithelial (MCF-7) 107880353
chr1 234668078 234668099 IRF1 JASPAR yes 36284666
chr1 234668080 234668101 ZNF263 JASPAR yes 36284667
chr1 234668086 234668107 IRF1 JASPAR yes 36284669
Genes associated with rs550378071[chr1:234668090], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More