EnhancerDB
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  3. rs550604866[chr17:25682402]
Enhancers that have rs550604866[chr17:25682402]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 25656275 25685575 enh4305
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs550604866[chr17:25682402]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 25682388 25682405 RARA JASPAR yes 53623813
chr17 25682392 25682496 POL24H8 ENCODE Uniform TFBS no Brain (SK-N-MC) 21747767
chr17 25682397 25682412 HNF4G JASPAR yes 53623814
chr17 25682397 25682412 NR2C2 JASPAR yes 53623815
chr17 25682398 25682419 IRF1 JASPAR yes 53623816
chr17 25682400 25682404 LFA1 TRANSFAC yes 53623817
chr17 25682401 25682415 IRF7 JASPAR yes 53623818
chr17 25682402 25682417 PRDM1 JASPAR yes 53623819
chr17 25682402 25682420 IRF2 JASPAR yes 53623820
Genes associated with rs550604866[chr17:25682402], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More