EnhancerDB
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  3. rs550802242[chr1:19758553]
Enhancers that have rs550802242[chr1:19758553]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19747725 19800935 enh99
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs550802242[chr1:19758553]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19758535 19758556 IRF1 JASPAR yes 27189370
chr1 19758536 19758557 IRF1 JASPAR yes 27189372
chr1 19758537 19758558 IRF1 JASPAR yes 27189374
chr1 19758538 19758553 FOXP1 JASPAR yes 27189375
chr1 19758538 19758559 IRF1 JASPAR yes 27189376
chr1 19758539 19758554 FOXP1 JASPAR yes 27189377
chr1 19758539 19758560 IRF1 JASPAR yes 27189378
chr1 19758540 19758555 FOXP1 JASPAR yes 27189379
chr1 19758540 19758561 IRF1 JASPAR yes 27189380
chr1 19758541 19758556 FOXP1 JASPAR yes 27189381
chr1 19758541 19758562 IRF1 JASPAR yes 27189382
chr1 19758542 19758557 FOXP1 JASPAR yes 27189383
chr1 19758542 19758563 IRF1 JASPAR yes 27189384
chr1 19758543 19758558 FOXP1 JASPAR yes 27189385
chr1 19758543 19758564 IRF1 JASPAR yes 27189386
chr1 19758544 19758559 FOXP1 JASPAR yes 27189387
chr1 19758544 19758565 IRF1 JASPAR yes 27189388
chr1 19758545 19758560 FOXP1 JASPAR yes 27189389
chr1 19758547 19758562 FOXP1 JASPAR yes 27189390
chr1 19758548 19758569 IRF1 JASPAR yes 27189391
chr1 19758549 19758564 FOXP1 JASPAR yes 27189392
chr1 19758549 19758570 IRF1 JASPAR yes 27189393
chr1 19758550 19758571 IRF1 JASPAR yes 27189394
Genes associated with rs550802242[chr1:19758553], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More