EnhancerDB
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  3. rs550988040[chr1:226855554]
Enhancers that have rs550988040[chr1:226855554]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 226838901 226907579 enh973
Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs550988040[chr1:226855554]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 226855535 226855555 RREB1 JASPAR yes 35830101
chr1 226855537 226855557 RREB1 JASPAR yes 35830102
chr1 226855539 226855559 RREB1 JASPAR yes 35830103
chr1 226855553 226855564 NRF1 JASPAR yes 35830104
chr1 226855554 226855565 NRF1 JASPAR yes 35830105
Genes associated with rs550988040[chr1:226855554], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More