EnhancerDB
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  3. rs552033812[chr1:218671334]
Enhancers that have rs552033812[chr1:218671334]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 218644305 218676855 enh12672
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Lung (PC-9) Esophagus Astrocyte Stomach Placenta Colon (HCT116) Uterus Peripheral Blood (MM.1S) Muscle (Myoblast) Breast Pancreas (Panc1) Muscle (Myotube) Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs552033812[chr1:218671334]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 218670916 218672285 ZBTB33 GTRD no Lung (A549) 107870511
chr1 218671096 218672164 ZNF143 GTRD no Epithelial (MCF-7) 21380924
chr1 218671096 218672164 ZNF143 GTRD no Epithelial (MCF-7) 107870512
chr1 218671210 218672416 ZNF143 GTRD no Epithelial (MCF-7) 21380925
chr1 218671210 218672416 ZNF143 GTRD no Epithelial (MCF-7) 107870513
chr1 218671211 218672427 ZNF143 GTRD no Epithelial (MCF-7) 21380926
chr1 218671211 218672427 ZNF143 GTRD no Epithelial (MCF-7) 107870514
chr1 218671245 218672277 ZNF143 GTRD no Epithelial (MCF-7) 21380927
chr1 218671245 218672277 ZNF143 GTRD no Epithelial (MCF-7) 107870515
chr1 218671257 218672209 ZNF143 GTRD no Epithelial (MCF-7) 21380928
chr1 218671257 218672209 ZNF143 GTRD no Epithelial (MCF-7) 107870516
chr1 218671257 218672217 ZBTB33 GTRD no Brain (SK-N-SH) 107870517
chr1 218671264 218672400 ZNF143 GTRD no Epithelial (MCF-7) 21380929
chr1 218671264 218672400 ZNF143 GTRD no Epithelial (MCF-7) 107870518
chr1 218671272 218672032 ZNF143 GTRD no Epithelial (MCF-7) 21380930
chr1 218671272 218672032 ZNF143 GTRD no Epithelial (MCF-7) 107870519
chr1 218671313 218671633 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21380931
chr1 218671317 218671887 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21380932
chr1 218671328 218672149 ZNF143 GTRD no Epithelial (MCF-7) 21380933
chr1 218671328 218672149 ZNF143 GTRD no Epithelial (MCF-7) 107870520
chr1 218671333 218672135 ZNF143 GTRD no Epithelial (MCF-7) 21380934
chr1 218671333 218672135 ZNF143 GTRD no Epithelial (MCF-7) 107870521
chr1 218671334 218671338 LFA1 TRANSFAC yes 35387772
Genes associated with rs552033812[chr1:218671334], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More