EnhancerDB
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  3. rs552171552[chr3:56853339]
Enhancers that have rs552171552[chr3:56853339]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr3 56850305 56876655 enh20643
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Astrocyte Blood (OCI-LY7) Placenta Uterus Lung (PC-9) Neural Stem Cells (H9) Thymus Stomach
Transcript factors that have rs552171552[chr3:56853339]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr3 56853334 56853339 GATA1 TRANSFAC yes 2598565
chr3 56853334 56853349 LEF1 JASPAR yes 2598566
chr3 56853335 56853349 TCF7L2 JASPAR yes 2598567
Genes associated with rs552171552[chr3:56853339], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More