EnhancerDB
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  3. rs552272268[chr1:235146474]
Enhancers that have rs552272268[chr1:235146474]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 235130325 235168235 enh997
Bone Marrow (K562) Liver Astrocyte Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Lung Heart
Transcript factors that have rs552272268[chr1:235146474]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 235146383 235149741 POLR2A UCSC Txn Factor no Conserved 107885561
chr1 235146414 235146850 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21402968
chr1 235146419 235146855 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21402969
chr1 235146449 235146713 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21402970
chr1 235146460 235146700 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21402971
chr1 235146465 235146474 SNAI2 JASPAR yes 36341871
chr1 235146465 235146475 ID4 JASPAR yes 36341872
chr1 235146465 235146475 TCF3 JASPAR yes 36341873
chr1 235146465 235146475 TCF4 JASPAR yes 36341874
chr1 235146470 235146479 HIC2 JASPAR yes 36341875
chr1 235146474 235146804 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21402972
Genes associated with rs552272268[chr1:235146474], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More