EnhancerDB
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  3. rs552333251[chr17:78652285]
Enhancers that have rs552333251[chr17:78652285]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 78617185 78655235 enh4633
Bone Marrow (K562) Astrocyte Colon (HCT116) Blood (Karpas-422) Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Neural Stem Cells (H9) Thymus Prostate (PC-3) Large Intestine Esophagus Placenta Muscle (Myoblast) Breast Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Heart
Transcript factors that have rs552333251[chr17:78652285]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 78651914 78652501 ZNF274 GTRD no Liver (HepG2) 21797082
chr17 78651914 78652501 ZNF274 GTRD no Liver (HepG2) 108307142
chr17 78652002 78652519 ZBTB33 GTRD no Lung (A549) 108307143
chr17 78652090 78652524 ZNF274 GTRD no Liver (HepG2) 21797083
chr17 78652090 78652524 ZNF274 GTRD no Liver (HepG2) 108307144
chr17 78652280 78652291 HOXC13 JASPAR yes 56266784
chr17 78652281 78652297 POU4F2 JASPAR yes 56266785
chr17 78652284 78652294 ALX3 JASPAR yes 56266786
chr17 78652284 78652294 HOXB2 JASPAR yes 56266787
chr17 78652284 78652294 MNX1 JASPAR yes 56266788
chr17 78652285 78652293 LMX1A JASPAR yes 56266789
chr17 78652285 78652293 LMX1B JASPAR yes 56266790
chr17 78652285 78652293 NKX6-1 JASPAR yes 56266791
chr17 78652285 78652293 NKX6-2 JASPAR yes 56266792
chr17 78652285 78652293 VAX1 JASPAR yes 56266793
chr17 78652285 78652293 VAX2 JASPAR yes 56266794
chr17 78652285 78652293 VSX1 JASPAR yes 56266795
chr17 78652285 78652293 VSX2 JASPAR yes 56266796
Genes associated with rs552333251[chr17:78652285], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More