EnhancerDB
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  3. rs552579457[chr1:27050536]
Enhancers that have rs552579457[chr1:27050536]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 27041525 27053715 enh11655
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 27049620 27050905 vista21
VISTA
Transcript factors that have rs552579457[chr1:27050536]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 27050526 27050536 PAX3 JASPAR yes 27653378
chr1 27050526 27050536 PAX7 JASPAR yes 27653379
chr1 27050526 27050536 PAX3 JASPAR yes 71124659
chr1 27050526 27050536 PAX7 JASPAR yes 71124660
chr1 27050528 27050537 VENTX JASPAR yes 27653380
chr1 27050528 27050537 VENTX JASPAR yes 71124661
chr1 27050528 27050538 EN2 JASPAR yes 27653381
chr1 27050528 27050538 GBX2 JASPAR yes 27653382
chr1 27050528 27050538 HESX1 JASPAR yes 27653383
chr1 27050528 27050538 LBX2 JASPAR yes 27653384
chr1 27050528 27050538 EN2 JASPAR yes 71124662
chr1 27050528 27050538 GBX2 JASPAR yes 71124663
chr1 27050528 27050538 HESX1 JASPAR yes 71124664
chr1 27050528 27050538 LBX2 JASPAR yes 71124665
chr1 27050528 27050540 HNF1B JASPAR yes 27653385
chr1 27050528 27050540 HNF1B JASPAR yes 71124666
chr1 27050529 27050537 LHX9 JASPAR yes 27653386
chr1 27050529 27050537 SHOX JASPAR yes 27653387
chr1 27050529 27050537 LHX9 JASPAR yes 71124667
chr1 27050529 27050537 SHOX JASPAR yes 71124668
chr1 27050533 27050553 RREB1 JASPAR yes 27653388
chr1 27050533 27050553 RREB1 JASPAR yes 71124669
Genes associated with rs552579457[chr1:27050536], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More