EnhancerDB
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  3. rs552606968[chr1:27975926]
Enhancers that have rs552606968[chr1:27975926]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 27968485 27992074 enh178
Bone Marrow (K562) Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Bone (Osteoblast) Blood (OCI-LY7) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Cervix (HeLa-S3) Large Intestine Esophagus Placenta Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs552606968[chr1:27975926]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 27975918 27975930 HES5 JASPAR yes 27718088
chr1 27975918 27975930 HES7 JASPAR yes 27718089
chr1 27975918 27975930 PKNOX1 JASPAR yes 27718090
chr1 27975918 27975930 TGIF2 JASPAR yes 27718091
chr1 27975919 27975928 SNAI2 JASPAR yes 27718092
chr1 27975919 27975929 HEY2 JASPAR yes 27718093
chr1 27975919 27975929 ID4 JASPAR yes 27718094
chr1 27975919 27975929 TCF4 JASPAR yes 27718095
chr1 27975926 27975944 TP73 JASPAR yes 27718096
Genes associated with rs552606968[chr1:27975926], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More