EnhancerDB
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  3. rs552612245[chr17:65471235]
Enhancers that have rs552612245[chr17:65471235]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 65460484 65480775 enh32309
Astrocyte Colon (HCT116) Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Kidney Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Spleen Muscle (Myotube) Lung Muscle (A673) Heart
Transcript factors that have rs552612245[chr17:65471235]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 65470530 65471330 ZNF143 GTRD no Epithelial (MCF-7) 21782241
chr17 65470530 65471330 ZNF143 GTRD no Epithelial (MCF-7) 108285878
chr17 65470552 65471283 ZNF143 GTRD no Epithelial (MCF-7) 21782243
chr17 65470552 65471283 ZNF143 GTRD no Epithelial (MCF-7) 108285880
chr17 65471212 65471452 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21782244
chr17 65471212 65471452 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108285881
chr17 65471224 65471245 REST JASPAR yes 55508887
chr17 65471225 65471239 MTF1 JASPAR yes 55508888
chr17 65471225 65471244 REST JASPAR yes 55508889
chr17 65471229 65471629 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21782245
chr17 65471229 65471629 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108285882
Genes associated with rs552612245[chr17:65471235], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More