EnhancerDB
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  3. rs552672929[chr1:172325923]
Enhancers that have rs552672929[chr1:172325923]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 172318125 172332422 enh12370
Liver Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Ovary Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Spleen Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs552672929[chr1:172325923]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 172325921 172325935 GATA2 JASPAR yes 33125457
chr1 172325923 172325931 GATA3 JASPAR yes 33125458
chr1 172325923 172325931 GATA5 JASPAR yes 33125459
Genes associated with rs552672929[chr1:172325923], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More