EnhancerDB
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  3. rs552893658[chr1:235061794]
Enhancers that have rs552893658[chr1:235061794]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 235041625 235072655 enh12798
Brain (SK-N-MC) Liver Astrocyte Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs552893658[chr1:235061794]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 235058866 235063947 ZNF274 GTRD no Liver (HepG2) 21400362
chr1 235058866 235063947 ZNF274 GTRD no Liver (HepG2) 107883952
chr1 235060150 235061799 ZNF143 GTRD no Epithelial (MCF-7) 21400366
chr1 235060256 235061815 ZNF143 GTRD no Epithelial (MCF-7) 21400373
chr1 235060277 235061838 ZNF143 GTRD no Epithelial (MCF-7) 21400377
chr1 235060281 235061826 ZNF143 GTRD no Epithelial (MCF-7) 21400378
chr1 235060381 235061962 ZNF143 GTRD no Epithelial (MCF-7) 21400390
chr1 235060437 235061923 ZNF143 GTRD no Epithelial (MCF-7) 21400400
chr1 235060458 235062105 ZNF274 GTRD no Liver (HepG2) 21400405
chr1 235060822 235062114 ZNF274 GTRD no Blood (GM12878) 21400432
chr1 235060892 235062083 ZNF274 GTRD no Blood (GM12878) 21400435
chr1 235061440 235061910 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 21400445
chr1 235061512 235062108 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 21400446
chr1 235061528 235061968 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21400447
chr1 235061549 235061829 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21400448
chr1 235061552 235061908 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21400449
chr1 235061593 235061953 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21400450
chr1 235061607 235061927 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21400451
chr1 235061628 235061958 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21400452
chr1 235061631 235061887 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21400453
chr1 235061650 235061906 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21400454
chr1 235061652 235061972 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21400455
chr1 235061673 235061903 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21400456
chr1 235061687 235062123 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21400457
chr1 235061728 235061885 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21400458
chr1 235061728 235061886 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21400459
chr1 235061744 235061860 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21400460
chr1 235061775 235061844 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21400461
chr1 235061779 235061794 HNF4A JASPAR yes 36331226
chr1 235061780 235061794 NR2F1 JASPAR yes 36331227
chr1 235061780 235061795 HNF4G JASPAR yes 36331228
Genes associated with rs552893658[chr1:235061794], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More