EnhancerDB
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  3. rs552994936[chr17:42188611]
Enhancers that have rs552994936[chr17:42188611]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 42170662 42193575 enh17179
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs552994936[chr17:42188611]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 42188603 42188614 TFAP2A JASPAR yes 54388597
chr17 42188603 42188614 TFAP2B JASPAR yes 54388598
chr17 42188603 42188614 TFAP2C JASPAR yes 54388599
chr17 42188609 42188621 PKNOX2 JASPAR yes 54388600
Genes associated with rs552994936[chr17:42188611], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More