EnhancerDB
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  3. rs553197030[chr6:34992165]
Enhancers that have rs553197030[chr6:34992165]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 34986593 35008101 enh23172
Astrocyte Adrenal Embryonic Stem Cell Line (H1-hESC) Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Lung (A549) Thyroid Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Breast Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs553197030[chr6:34992165]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 34992151 34992165 NR2F1 JASPAR yes 101256185
chr6 34992151 34992165 RXRB JASPAR yes 101256186
chr6 34992151 34992165 RXRG JASPAR yes 101256187
chr6 34992161 34992182 IRF1 JASPAR yes 101256188
chr6 34992163 34992178 IRF9 JASPAR yes 101256189
chr6 34992164 34992170 TCF4 TRANSFAC yes 101256190
chr6 34992164 34992178 IRF7 JASPAR yes 101256191
chr6 34992164 34992178 IRF8 JASPAR yes 101256192
chr6 34992165 34992180 PRDM1 JASPAR yes 101256193
Genes associated with rs553197030[chr6:34992165], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More