EnhancerDB
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  3. rs553269801[chr2:27936029]
Enhancers that have rs553269801[chr2:27936029]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 27922526 27936875 enh18375
Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Ovary Bone (Osteoblast) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Prostate (RWPE1) Lung Heart
Transcript factors that have rs553269801[chr2:27936029]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 27936017 27936029 YY1 JASPAR yes 72584285
chr2 27936023 27936034 NFIL3 JASPAR yes 72584286
chr2 27936027 27936042 FOXP1 JASPAR yes 72584287
chr2 27936028 27936043 FOXP1 JASPAR yes 72584288
chr2 27936028 27936049 IRF1 JASPAR yes 72584289
chr2 27936029 27936044 FOXP1 JASPAR yes 72584290
chr2 27936029 27936050 IRF1 JASPAR yes 72584291
Genes associated with rs553269801[chr2:27936029], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More