EnhancerDB
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  3. rs553416406[chr18:55932200]
Enhancers that have rs553416406[chr18:55932200]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr18 55922865 55949275 enh17739
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Lung Stomach Muscle (A673) Placenta Thyroid Uterus Peripheral Blood (MM.1S) Pancreas Neural Stem Cells (H9) Heart
Transcript factors that have rs553416406[chr18:55932200]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr18 55932188 55932209 IRF1 JASPAR yes 110933836
chr18 55932190 55932205 STAT2 JASPAR yes 110933837
chr18 55932192 55932204 IRF1 JASPAR yes 110933838
chr18 55932192 55932206 IRF7 JASPAR yes 110933839
chr18 55932192 55932206 IRF8 JASPAR yes 110933840
chr18 55932192 55932207 IRF9 JASPAR yes 110933841
chr18 55932200 55932220 TBX19 JASPAR yes 110933842
Genes associated with rs553416406[chr18:55932200], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More