EnhancerDB
  1. Home
  2. SNP
  3. rs553417560[chr3:149340476]
Enhancers that have rs553417560[chr3:149340476]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr3 149284825 149341275 enh21022
Brain (SK-N-MC) Liver Colon (HCT116) Uterus Kidney Stomach Skin (Keratinocyte) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs553417560[chr3:149340476]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr3 149340458 149340476 IRF2 JASPAR yes 6515656
chr3 149340461 149340481 RREB1 JASPAR yes 6515659
chr3 149340462 149340482 RREB1 JASPAR yes 6515660
chr3 149340463 149340481 IRF2 JASPAR yes 6515661
chr3 149340464 149340476 IRF1 JASPAR yes 6515662
chr3 149340466 149340486 RREB1 JASPAR yes 6515663
chr3 149340467 149340487 RREB1 JASPAR yes 6515664
chr3 149340468 149340488 RREB1 JASPAR yes 6515665
chr3 149340470 149340485 RUNX2 JASPAR yes 6515666
chr3 149340470 149340491 IRF1 JASPAR yes 6515667
chr3 149340471 149340491 RREB1 JASPAR yes 6515668
chr3 149340472 149340487 IRF9 JASPAR yes 6515669
chr3 149340472 149340492 RREB1 JASPAR yes 6515670
chr3 149340473 149340487 IRF7 JASPAR yes 6515671
chr3 149340475 149340487 IRF1 JASPAR yes 6515672
chr3 149340475 149340490 RUNX2 JASPAR yes 6515673
chr3 149340476 149340497 IRF1 JASPAR yes 6515674
Genes associated with rs553417560[chr3:149340476], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More