EnhancerDB
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  3. rs553538738[chr12:111864185]
Enhancers that have rs553538738[chr12:111864185]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 111858009 111880135 enh2602
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs553538738[chr12:111864185]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 111864165 111864186 IRF1 JASPAR yes 123746969
chr12 111864170 111864191 IRF1 JASPAR yes 123746973
chr12 111864176 111864197 IRF1 JASPAR yes 123746974
chr12 111864177 111864192 LEF1 JASPAR yes 123746975
chr12 111864178 111864192 TCF7L2 JASPAR yes 123746976
chr12 111864182 111864190 GATA3 JASPAR yes 123746977
chr12 111864183 111864204 IRF1 JASPAR yes 123746978
chr12 111864184 111864205 IRF1 JASPAR yes 123746979
chr12 111864185 111864206 IRF1 JASPAR yes 123746980
Genes associated with rs553538738[chr12:111864185], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More