EnhancerDB
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  3. rs553561347[chr1:168449073]
Enhancers that have rs553561347[chr1:168449073]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 168433465 168471139 enh12354
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Lung (A549) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs553561347[chr1:168449073]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 168449065 168449076 HOXA10 JASPAR yes 32930011
chr1 168449066 168449076 HOXD13 JASPAR yes 32930012
chr1 168449071 168449085 ONECUT3 JASPAR yes 32930013
Genes associated with rs553561347[chr1:168449073], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More