EnhancerDB
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  3. rs553593564[chr12:125195745]
Enhancers that have rs553593564[chr12:125195745]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 125176905 125261395 enh2676
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs553593564[chr12:125195745]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 125194329 125196454 ZNF274 GTRD no Bone Marrow (K562) 21582151
chr12 125194623 125195872 ZNF143 GTRD no Epithelial (MCF-7) 21582153
chr12 125195583 125196155 ZBTB33 GTRD no Brain (SK-N-SH) 21582170
chr12 125195742 125195757 FOXP1 JASPAR yes 124411957
chr12 125195743 125195758 FOXP1 JASPAR yes 124411958
chr12 125195744 125195759 FOXP1 JASPAR yes 124411959
chr12 125195744 125195765 IRF1 JASPAR yes 124411960
chr12 125195745 125195760 FOXP1 JASPAR yes 124411961
Genes associated with rs553593564[chr12:125195745], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More