EnhancerDB
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  3. rs553640129[chr1:39627557]
Enhancers that have rs553640129[chr1:39627557]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 39588469 39628695 enh11759
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs553640129[chr1:39627557]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 39627541 39627557 POU4F2 JASPAR yes 28260650
chr1 39627541 39627557 POU4F3 JASPAR yes 28260651
chr1 39627543 39627557 POU4F1 JASPAR yes 28260656
chr1 39627543 39627558 HNF1A JASPAR yes 28260657
chr1 39627544 39627557 HNF1B JASPAR yes 28260666
chr1 39627544 39627558 POU4F1 JASPAR yes 28260667
chr1 39627544 39627560 POU4F2 JASPAR yes 28260668
chr1 39627544 39627560 POU4F3 JASPAR yes 28260669
chr1 39627545 39627561 POU4F3 JASPAR yes 28260680
chr1 39627547 39627561 POU4F1 JASPAR yes 28260683
chr1 39627547 39627562 HNF1A JASPAR yes 28260684
chr1 39627548 39627560 MEF2A JASPAR yes 28260685
chr1 39627548 39627560 MEF2D JASPAR yes 28260686
chr1 39627548 39627562 POU4F1 JASPAR yes 28260687
chr1 39627548 39627564 POU4F2 JASPAR yes 28260688
chr1 39627548 39627564 POU4F3 JASPAR yes 28260689
chr1 39627549 39627559 MEF2A JASPAR yes 28260690
chr1 39627550 39627561 CDX2 JASPAR yes 28260691
chr1 39627551 39627562 HOXA10 JASPAR yes 28260692
chr1 39627552 39627561 CDX1 JASPAR yes 28260693
chr1 39627552 39627562 HOXA13 JASPAR yes 28260694
chr1 39627552 39627562 HOXD13 JASPAR yes 28260695
chr1 39627553 39627564 PROP1 JASPAR yes 28260696
chr1 39627557 39627568 PROP1 JASPAR yes 28260697
Genes associated with rs553640129[chr1:39627557], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More