EnhancerDB
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  3. rs553642294[chr1:27866919]
Enhancers that have rs553642294[chr1:27866919]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 27859909 27873735 enh11667
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Breast Liver (HepG2) Heart
Transcript factors that have rs553642294[chr1:27866919]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 27866892 27870463 ZNF274 GTRD no Bone Marrow (K562) 107802587
chr1 27866905 27866920 FOXP1 JASPAR yes 27706940
chr1 27866906 27866921 FOXP1 JASPAR yes 27706941
chr1 27866906 27866927 IRF1 JASPAR yes 27706942
chr1 27866907 27866922 FOXP1 JASPAR yes 27706944
chr1 27866909 27866924 FOXP1 JASPAR yes 27706945
chr1 27866910 27866925 STAT2 JASPAR yes 27706946
chr1 27866911 27866926 FOXP1 JASPAR yes 27706947
chr1 27866911 27866932 IRF1 JASPAR yes 27706948
chr1 27866913 27866925 FOXC2 JASPAR yes 27706949
chr1 27866914 27866925 FOXP2 JASPAR yes 27706950
Genes associated with rs553642294[chr1:27866919], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More