EnhancerDB
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  3. rs553893559[chr1:156073174]
Enhancers that have rs553893559[chr1:156073174]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 156063928 156076316 enh12294
Liver Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Bone (Osteoblast) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 156072303 156076849 vista105
VISTA
chr1 156073142 156073699 vista3444
VISTA
Transcript factors that have rs553893559[chr1:156073174]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 156072366 156073518 ZNF274 GTRD no Liver (HepG2) 21341853
chr1 156072366 156073518 ZNF274 GTRD no Liver (HepG2) 107835873
chr1 156072366 156073518 ZNF274 GTRD no Liver (HepG2) 107835874
chr1 156073026 156073551 ZNF274 GTRD no Liver (HepG2) 21341856
chr1 156073026 156073551 ZNF274 GTRD no Liver (HepG2) 107835878
chr1 156073059 156073335 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21341857
chr1 156073059 156073335 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107835879
chr1 156073133 156073793 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21341858
chr1 156073133 156073793 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107835880
chr1 156073164 156073178 PLAG1 JASPAR yes 32374449
chr1 156073164 156073178 PLAG1 JASPAR yes 71148493
chr1 156073164 156073178 PLAG1 JASPAR yes 118376507
Genes associated with rs553893559[chr1:156073174], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 156052364 156109880 + LMNA ENSG00000160789.15 156052364 0 Spleen 0.066709 1354