EnhancerDB
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  3. rs553939189[chr5:173179719]
Enhancers that have rs553939189[chr5:173179719]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 173178093 173268555 enh8886
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs553939189[chr5:173179719]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 173179709 173179719 EN2 JASPAR yes 67900440
chr5 173179709 173179719 ESX1 JASPAR yes 67900441
chr5 173179709 173179719 GBX1 JASPAR yes 67900442
chr5 173179709 173179719 GBX2 JASPAR yes 67900443
chr5 173179709 173179719 HESX1 JASPAR yes 67900444
chr5 173179709 173179719 LBX2 JASPAR yes 67900445
chr5 173179709 173179719 LHX2 JASPAR yes 67900446
chr5 173179709 173179719 MIXL1 JASPAR yes 67900447
chr5 173179709 173179719 RAX JASPAR yes 67900448
Genes associated with rs553939189[chr5:173179719], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More