EnhancerDB
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  3. rs554006892[chr1:39588872]
Enhancers that have rs554006892[chr1:39588872]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 39588469 39628695 enh11759
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs554006892[chr1:39588872]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 39588862 39588873 FOXB1 JASPAR yes 28254252
chr1 39588863 39588875 MEF2A JASPAR yes 28254254
chr1 39588864 39588874 MEF2A JASPAR yes 28254255
chr1 39588865 39588873 FOXL1 JASPAR yes 28254256
chr1 39588865 39588878 POU3F3 JASPAR yes 28254257
chr1 39588869 39588873 TEAD2 TRANSFAC yes 28254258
chr1 39588869 39588874 TBP TRANSFAC yes 28254259
chr1 39588869 39588875 TMF TRANSFAC yes 28254260
chr1 39588869 39588890 IRF1 JASPAR yes 28254261
chr1 39588870 39588891 IRF1 JASPAR yes 28254262
chr1 39588872 39588893 IRF1 JASPAR yes 28254263
Genes associated with rs554006892[chr1:39588872], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More