EnhancerDB
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  3. rs554032489[chr17:80508313]
Enhancers that have rs554032489[chr17:80508313]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 80480565 80515355 enh4649
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs554032489[chr17:80508313]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 80508305 80508315 BARHL2 JASPAR yes 56373625
chr17 80508305 80508320 HNF1A JASPAR yes 56373626
chr17 80508306 80508319 HNF1B JASPAR yes 56373627
chr17 80508307 80508317 PAX3 JASPAR yes 56373628
chr17 80508307 80508317 PAX7 JASPAR yes 56373629
chr17 80508313 80509153 TCF7L2 GTRD no Colon (HCT116) 21800733
chr17 80508313 80509153 TCF7L2 GTRD no Colon (HCT116) 108312689
Genes associated with rs554032489[chr17:80508313], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More