EnhancerDB
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  3. rs554243177[chr12:52521757]
Enhancers that have rs554243177[chr12:52521757]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52508085 52522855 enh2356
Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Large Intestine Esophagus Blood (GM12878) Spleen Liver (HepG2) Muscle (A673) Heart
Transcript factors that have rs554243177[chr12:52521757]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52519065 52523398 P63 GTRD no Skin (Keratinocyte) 21546231
chr12 52519499 52523414 P63 GTRD no Skin (Keratinocyte) 21546243
chr12 52520172 52522261 P63 GTRD no Skin (Keratinocyte) 21546246
chr12 52520293 52522962 AR GTRD no Prostate (PC-3) 21546248
chr12 52520784 52522202 ZNF143 GTRD no Epithelial (MCF-7) 21546249
chr12 52520893 52521803 ZNF143 GTRD no Epithelial (MCF-7) 21546250
chr12 52520958 52521788 ZNF143 GTRD no Epithelial (MCF-7) 21546252
chr12 52520963 52521760 ZNF143 GTRD no Epithelial (MCF-7) 21546253
chr12 52521045 52523202 P63 GTRD no Skin (Keratinocyte) 21546258
chr12 52521091 52521779 ZNF143 GTRD no Epithelial (MCF-7) 21546262
chr12 52521574 52522203 ZNF143 GTRD no Epithelial (MCF-7) 21546268
chr12 52521596 52523194 ZNF143 GTRD no Epithelial (MCF-7) 21546269
chr12 52521752 52521757 SP1 TRANSFAC yes 120919754
Genes associated with rs554243177[chr12:52521757], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More