EnhancerDB
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  3. rs554263523[chr1:157979832]
Enhancers that have rs554263523[chr1:157979832]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 157969514 158001213 enh12308
Brain (SK-N-MC) Astrocyte Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Stomach Skin (Keratinocyte) Ovary Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs554263523[chr1:157979832]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 157979820 157979834 GATA2 JASPAR yes 32456824
chr1 157979824 157979832 GATA5 JASPAR yes 32456825
chr1 157979826 157979837 CDX2 JASPAR yes 32456826
chr1 157979827 157979838 HOXA10 JASPAR yes 32456827
chr1 157979827 157979838 HOXC11 JASPAR yes 32456828
chr1 157979827 157979838 HOXC12 JASPAR yes 32456829
chr1 157979827 157979838 HOXC13 JASPAR yes 32456830
chr1 157979828 157979837 CDX1 JASPAR yes 32456831
chr1 157979828 157979838 HOXC10 JASPAR yes 32456832
chr1 157979828 157979838 HOXD11 JASPAR yes 32456833
Genes associated with rs554263523[chr1:157979832], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More