EnhancerDB
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  3. rs554325854[chr6:34620948]
Enhancers that have rs554325854[chr6:34620948]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 34618105 34636675 enh9069
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Blood (OCI-LY7) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Placenta Lung (PC-9) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs554325854[chr6:34620948]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 34620927 34620948 IRF1 JASPAR yes 101228467
chr6 34620929 34620950 IRF1 JASPAR yes 101228468
chr6 34620931 34620952 IRF1 JASPAR yes 101228469
chr6 34620931 34620952 ZNF263 JASPAR yes 101228470
chr6 34620935 34620956 IRF1 JASPAR yes 101228471
chr6 34620937 34620958 IRF1 JASPAR yes 101228472
chr6 34620941 34620956 FOXP1 JASPAR yes 101228473
Genes associated with rs554325854[chr6:34620948], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More