EnhancerDB
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  3. rs554385916[chr1:27747116]
Enhancers that have rs554385916[chr1:27747116]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 27742945 27784244 enh174
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs554385916[chr1:27747116]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 27747109 27747120 E2F4 JASPAR yes 27691701
chr1 27747109 27747120 E2F6 JASPAR yes 27691702
chr1 27747110 27747121 E2F1 JASPAR yes 27691703
Genes associated with rs554385916[chr1:27747116], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More