EnhancerDB
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  3. rs554398669[chr2:232477858]
Enhancers that have rs554398669[chr2:232477858]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 232460065 232495135 enh6201
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs554398669[chr2:232477858]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 232476928 232480423 POLR2A UCSC Txn Factor no Conserved 108435689
chr2 232476928 232480423 POLR2A UCSC Txn Factor no Conserved 108435690
chr2 232476928 232480423 POLR2A UCSC Txn Factor no Conserved 108435691
chr2 232477850 232477861 NFKB1 JASPAR yes 81725934
chr2 232477850 232477863 NFKB2 JASPAR yes 81725935
chr2 232477851 232477864 NFKB2 JASPAR yes 81725936
chr2 232477856 232477866 SP1 JASPAR yes 81725937
chr2 232477856 232477866 ZNF740 JASPAR yes 81725938
chr2 232477858 232477868 ZNF740 JASPAR yes 81725939
chr2 232477858 232477872 PLAG1 JASPAR yes 81725940
Genes associated with rs554398669[chr2:232477858], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More