EnhancerDB
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  3. rs554530369[chr17:25665997]
Enhancers that have rs554530369[chr17:25665997]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 25656275 25685575 enh4305
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs554530369[chr17:25665997]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 25665979 25666000 IRF1 JASPAR yes 53621294
chr17 25665992 25666007 HNF1A JASPAR yes 53621295
chr17 25665996 25666006 GSX2 JASPAR yes 53621296
chr17 25665996 25666006 HOXB2 JASPAR yes 53621297
chr17 25665996 25666006 HOXB3 JASPAR yes 53621298
chr17 25665996 25666006 MNX1 JASPAR yes 53621299
chr17 25665996 25666006 POU6F1 JASPAR yes 53621300
chr17 25665996 25666007 HOXA10 JASPAR yes 53621301
chr17 25665997 25666005 LMX1A JASPAR yes 53621302
chr17 25665997 25666005 LMX1B JASPAR yes 53621303
chr17 25665997 25666005 NKX6-1 JASPAR yes 53621304
chr17 25665997 25666005 NKX6-2 JASPAR yes 53621305
chr17 25665997 25666005 VAX1 JASPAR yes 53621306
chr17 25665997 25666005 VAX2 JASPAR yes 53621307
chr17 25665997 25666005 VSX1 JASPAR yes 53621308
chr17 25665997 25666005 VSX2 JASPAR yes 53621309
Genes associated with rs554530369[chr17:25665997], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More