EnhancerDB
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  3. rs554695978[chr6:16319218]
Enhancers that have rs554695978[chr6:16319218]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 16314945 16326043 enh8974
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs554695978[chr6:16319218]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 16319205 16319219 PLAG1 JASPAR yes 100286796
chr6 16319207 16319222 TFAP2A JASPAR yes 100286798
chr6 16319207 16319222 TFAP2C JASPAR yes 100286799
chr6 16319208 16319219 TFAP2A JASPAR yes 100286800
chr6 16319208 16319219 TFAP2B JASPAR yes 100286801
chr6 16319208 16319219 TFAP2C JASPAR yes 100286802
chr6 16319213 16319224 E2F1 JASPAR yes 100286803
chr6 16319214 16319219 SP1 TRANSFAC yes 100286804
chr6 16319214 16319225 E2F4 JASPAR yes 100286805
chr6 16319214 16319225 E2F6 JASPAR yes 100286806
chr6 16319215 16319220 SP1 TRANSFAC yes 100286807
Genes associated with rs554695978[chr6:16319218], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More