EnhancerDB
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  3. rs554963002[chr1:1792127]
Enhancers that have rs554963002[chr1:1792127]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 1770710 1799155 enh6
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs554963002[chr1:1792127]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 1792116 1792131 TFAP2A JASPAR yes 26208257
chr1 1792119 1792131 TFAP2A JASPAR yes 26208258
chr1 1792119 1792131 TFAP2B JASPAR yes 26208259
chr1 1792119 1792131 TFAP2C JASPAR yes 26208260
chr1 1792123 1792132 THAP1 JASPAR yes 26208261
chr1 1792124 1792143 PAX5 JASPAR yes 26208262
chr1 1792126 1792130 LFA1 TRANSFAC yes 26208263
Genes associated with rs554963002[chr1:1792127], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More