EnhancerDB
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  3. rs555528648[chr1:225655406]
Enhancers that have rs555528648[chr1:225655406]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 225626185 225658051 enh950
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 225654906 225655584 vista5319
VISTA
Transcript factors that have rs555528648[chr1:225655406]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 225650829 225656613 ZBTB33 GTRD no Lung (A549) 107874230
chr1 225651124 225656651 ZBTB33 GTRD no Lung (A549) 107874231
chr1 225651156 225656546 ZBTB33 GTRD no Lung (A549) 107874232
chr1 225654615 225656601 AR GTRD no Prostate (PC-3) 21384977
chr1 225654615 225656601 AR GTRD no Prostate (PC-3) 107874236
chr1 225654661 225655873 POLR2A UCSC Txn Factor no Conserved 107874238
chr1 225654839 225656525 ZNF274 GTRD no Cervix (HeLa-S3) 21384980
chr1 225654839 225656525 ZNF274 GTRD no Cervix (HeLa-S3) 107874250
chr1 225654899 225656614 ZBTB33 GTRD no Lung (A549) 107874259
chr1 225654907 225656334 ZNF274 GTRD no Cervix (HeLa-S3) 21384983
chr1 225654907 225656334 ZNF274 GTRD no Cervix (HeLa-S3) 107874261
chr1 225654916 225656609 ZBTB33 GTRD no Lung (A549) 107874262
chr1 225654932 225656144 ZBTB33 GTRD no Brain (SK-N-SH) 21384984
chr1 225654932 225656144 ZBTB33 GTRD no Brain (SK-N-SH) 107874263
chr1 225654934 225656768 TEF1 GTRD no Bone (Osteoblast) 21384985
chr1 225654934 225656768 TEF1 GTRD no Bone (Osteoblast) 107874265
chr1 225654937 225656507 ZBTB33 GTRD no Lung (A549) 107874266
chr1 225654942 225656436 ZBTB33 GTRD no Brain (SK-N-SH) 21384986
chr1 225654942 225656436 ZBTB33 GTRD no Brain (SK-N-SH) 107874267
chr1 225654943 225656383 ZBTB33 GTRD no Lung (A549) 107874268
chr1 225654944 225656455 ZBTB33 GTRD no Brain (SK-N-SH) 21384987
chr1 225654944 225656455 ZBTB33 GTRD no Brain (SK-N-SH) 107874269
chr1 225654947 225656543 ZBTB33 GTRD no Lung (A549) 107874270
chr1 225654947 225656595 ZBTB33 GTRD no Lung (A549) 107874271
chr1 225654958 225656370 ZNF274 GTRD no Cervix (HeLa-S3) 21384988
chr1 225654958 225656370 ZNF274 GTRD no Cervix (HeLa-S3) 107874272
chr1 225654960 225656355 ZBTB33 GTRD no Lung (A549) 107874273
chr1 225654963 225656300 ZBTB33 GTRD no Brain (SK-N-SH) 21384989
chr1 225654963 225656300 ZBTB33 GTRD no Brain (SK-N-SH) 107874274
chr1 225654964 225656200 ZNF274 GTRD no Cervix (HeLa-S3) 21384990
chr1 225654964 225656200 ZNF274 GTRD no Cervix (HeLa-S3) 107874275
chr1 225654968 225656542 ZBTB33 GTRD no Lung (A549) 107874276
chr1 225654971 225656403 ZNF274 GTRD no Cervix (HeLa-S3) 21384991
chr1 225654971 225656403 ZNF274 GTRD no Cervix (HeLa-S3) 107874277
chr1 225654979 225656471 ZNF274 GTRD no Cervix (HeLa-S3) 21384992
chr1 225654979 225656471 ZNF274 GTRD no Cervix (HeLa-S3) 107874278
chr1 225654982 225656530 ZNF274 GTRD no Cervix (HeLa-S3) 21384993
chr1 225654982 225656530 ZNF274 GTRD no Cervix (HeLa-S3) 107874279
chr1 225655004 225656253 ZBTB33 GTRD no Brain (SK-N-SH) 21384994
chr1 225655004 225656253 ZBTB33 GTRD no Brain (SK-N-SH) 107874280
chr1 225655006 225656533 ZBTB33 GTRD no Lung (A549) 107874281
chr1 225655017 225656186 ZBTB33 GTRD no Lung (A549) 107874282
chr1 225655020 225656332 ZBTB33 GTRD no Lung (A549) 107874283
chr1 225655046 225656546 ZBTB33 GTRD no Brain (SK-N-SH) 21384995
chr1 225655046 225656546 ZBTB33 GTRD no Brain (SK-N-SH) 107874284
chr1 225655054 225656197 ZNF274 GTRD no Cervix (HeLa-S3) 21384996
chr1 225655054 225656197 ZNF274 GTRD no Cervix (HeLa-S3) 107874285
chr1 225655062 225656509 ZBTB33 GTRD no Lung (A549) 107874286
chr1 225655071 225656451 ZBTB33 GTRD no Brain (SK-N-SH) 21384997
chr1 225655071 225656451 ZBTB33 GTRD no Brain (SK-N-SH) 107874287
chr1 225655074 225656144 ZBTB33 GTRD no Brain (SK-N-SH) 21384998
chr1 225655074 225656144 ZBTB33 GTRD no Brain (SK-N-SH) 107874288
chr1 225655076 225656199 ZBTB33 GTRD no Lung (A549) 107874289
chr1 225655088 225656443 ZNF274 GTRD no Cervix (HeLa-S3) 21384999
chr1 225655088 225656443 ZNF274 GTRD no Cervix (HeLa-S3) 107874290
chr1 225655108 225656398 ZBTB33 GTRD no Lung (A549) 107874291
chr1 225655117 225656301 ZNF274 GTRD no Cervix (HeLa-S3) 21385000
chr1 225655117 225656301 ZNF274 GTRD no Cervix (HeLa-S3) 107874292
chr1 225655118 225656445 ZBTB33 GTRD no Brain (SK-N-SH) 21385001
chr1 225655118 225656445 ZBTB33 GTRD no Brain (SK-N-SH) 107874293
chr1 225655123 225656512 ZBTB33 GTRD no Brain (SK-N-SH) 21385002
chr1 225655123 225656512 ZBTB33 GTRD no Brain (SK-N-SH) 107874294
chr1 225655141 225655439 ZNF274 GTRD no Liver (HepG2) 21385003
chr1 225655141 225655439 ZNF274 GTRD no Liver (HepG2) 107874295
chr1 225655166 225656394 ZBTB33 GTRD no Brain (SK-N-SH) 21385004
chr1 225655166 225656394 ZBTB33 GTRD no Brain (SK-N-SH) 107874296
chr1 225655171 225656356 ZBTB33 GTRD no Brain (SK-N-SH) 21385005
chr1 225655171 225656356 ZBTB33 GTRD no Brain (SK-N-SH) 107874297
chr1 225655183 225655747 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107874298
chr1 225655188 225656428 ZBTB33 GTRD no Brain (SK-N-SH) 21385006
chr1 225655188 225656428 ZBTB33 GTRD no Brain (SK-N-SH) 107874299
chr1 225655194 225655730 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107874300
chr1 225655200 225656286 ZBTB33 GTRD no Brain (SK-N-SH) 21385007
chr1 225655200 225656286 ZBTB33 GTRD no Brain (SK-N-SH) 107874301
chr1 225655206 225655802 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107874302
chr1 225655209 225655812 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107874303
chr1 225655213 225656179 TCF7L2 GTRD no Colon (HCT116) 21385008
chr1 225655213 225656179 TCF7L2 GTRD no Colon (HCT116) 107874304
chr1 225655217 225656389 ZBTB33 GTRD no Brain (SK-N-SH) 21385009
chr1 225655217 225656389 ZBTB33 GTRD no Brain (SK-N-SH) 107874305
chr1 225655221 225656297 ZNF274 GTRD no Cervix (HeLa-S3) 21385010
chr1 225655221 225656297 ZNF274 GTRD no Cervix (HeLa-S3) 107874306
chr1 225655223 225656187 TCF7L2 GTRD no Colon (HCT116) 21385011
chr1 225655223 225656187 TCF7L2 GTRD no Colon (HCT116) 107874307
chr1 225655244 225656289 ZBTB33 GTRD no Brain (SK-N-SH) 21385012
chr1 225655244 225656289 ZBTB33 GTRD no Brain (SK-N-SH) 107874308
chr1 225655247 225656289 ZBTB33 GTRD no Lung (A549) 107874309
chr1 225655248 225655684 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107874310
chr1 225655254 225656312 ZBTB33 GTRD no Brain (SK-N-SH) 21385013
chr1 225655254 225656312 ZBTB33 GTRD no Brain (SK-N-SH) 107874311
chr1 225655262 225656090 ZNF274 GTRD no Cervix (HeLa-S3) 21385014
chr1 225655262 225656090 ZNF274 GTRD no Cervix (HeLa-S3) 107874312
chr1 225655291 225655671 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107874313
chr1 225655293 225655813 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107874314
chr1 225655296 225655706 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107874315
chr1 225655302 225656292 ZNF274 GTRD no Liver (HepG2) 21385015
chr1 225655302 225656292 ZNF274 GTRD no Liver (HepG2) 107874316
chr1 225655309 225656215 ZBTB33 GTRD no Brain (SK-N-SH) 21385016
chr1 225655309 225656215 ZBTB33 GTRD no Brain (SK-N-SH) 107874317
chr1 225655311 225655691 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107874318
chr1 225655313 225656481 ZBTB33 GTRD no Brain (SK-N-SH) 21385017
chr1 225655313 225656481 ZBTB33 GTRD no Brain (SK-N-SH) 107874319
chr1 225655319 225656172 ZNF274 GTRD no Cervix (HeLa-S3) 21385018
chr1 225655319 225656172 ZNF274 GTRD no Cervix (HeLa-S3) 107874320
chr1 225655333 225656477 ZBTB33 GTRD no Lung (A549) 107874321
chr1 225655342 225655672 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107874322
chr1 225655346 225655761 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107874323
chr1 225655347 225655657 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107874324
chr1 225655348 225656435 ZBTB33 GTRD no Brain (SK-N-SH) 21385019
chr1 225655348 225656435 ZBTB33 GTRD no Brain (SK-N-SH) 107874325
chr1 225655350 225655670 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107874326
chr1 225655351 225655788 ZNF274 GTRD no Cervix (HeLa-S3) 21385020
chr1 225655351 225655788 ZNF274 GTRD no Cervix (HeLa-S3) 107874327
chr1 225655354 225655770 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107874328
chr1 225655360 225655700 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107874329
chr1 225655361 225656154 ZBTB33 GTRD no Lung (A549) 107874330
chr1 225655370 225655663 RUNX3 UCSC Txn Factor no Conserved 107874331
chr1 225655370 225655663 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107874332
chr1 225655370 225656503 ZBTB33 GTRD no Lung (A549) 107874333
chr1 225655371 225655681 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21385021
chr1 225655371 225655681 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107874334
chr1 225655376 225656158 ZNF274 GTRD no Cervix (HeLa-S3) 21385022
chr1 225655376 225656158 ZNF274 GTRD no Cervix (HeLa-S3) 107874335
chr1 225655377 225656421 ZBTB33 GTRD no Lung (A549) 107874336
chr1 225655380 225655640 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107874337
chr1 225655389 225656274 ZBTB33 GTRD no Lung (A549) 107874338
chr1 225655402 225655666 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107874339
chr1 225655404 225655708 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107874340
chr1 225655405 225655416 NFKB1 JASPAR yes 35744302
chr1 225655405 225655416 NFKB1 JASPAR yes 118469361
Genes associated with rs555528648[chr1:225655406], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More