EnhancerDB
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  3. rs555654201[chr12:52513874]
Enhancers that have rs555654201[chr12:52513874]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52508085 52522855 enh2356
Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Large Intestine Esophagus Blood (GM12878) Spleen Liver (HepG2) Muscle (A673) Heart
Transcript factors that have rs555654201[chr12:52513874]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52513207 52519034 P63 GTRD no Skin (Keratinocyte) 21546171
chr12 52513239 52515430 P63 GTRD no Skin (Keratinocyte) 21546177
chr12 52513383 52514799 P63 GTRD no Skin (Keratinocyte) 21546180
chr12 52513384 52515273 P63 GTRD no Skin (Keratinocyte) 21546181
chr12 52513703 52514223 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21546182
chr12 52513791 52514151 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21546183
chr12 52513818 52514038 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21546184
chr12 52513833 52514123 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21546185
chr12 52513844 52514134 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21546186
chr12 52513867 52514091 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21546187
chr12 52513867 52514111 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21546188
chr12 52513870 52513884 GATA2 JASPAR yes 120918643
chr12 52513871 52514061 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21546189
Genes associated with rs555654201[chr12:52513874], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More