EnhancerDB
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  3. rs555841817[chr1:226891661]
Enhancers that have rs555841817[chr1:226891661]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 226838901 226907579 enh973
Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs555841817[chr1:226891661]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 226890795 226891803 POLR2A UCSC Txn Factor no Conserved 107876276
chr1 226891025 226891709 TCF7L2 GTRD no Colon (HCT116) 21387243
chr1 226891025 226891709 TCF7L2 GTRD no Colon (HCT116) 107876285
chr1 226891045 226891751 E2F1 UCSC Txn Factor no Conserved 107876291
chr1 226891069 226892789 TCF7L2 GTRD no Colon (HCT116) 21387253
chr1 226891069 226892789 TCF7L2 GTRD no Colon (HCT116) 107876298
chr1 226891087 226891711 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107876301
chr1 226891095 226891751 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21387257
chr1 226891095 226891751 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 107876303
chr1 226891654 226891665 CDX2 JASPAR yes 35835602
chr1 226891655 226891665 MNX1 JASPAR yes 35835603
chr1 226891655 226891666 HOXA10 JASPAR yes 35835604
chr1 226891655 226891666 HOXC13 JASPAR yes 35835605
chr1 226891656 226891665 CDX1 JASPAR yes 35835606
chr1 226891656 226891666 HOXA13 JASPAR yes 35835607
chr1 226891656 226891666 HOXB13 JASPAR yes 35835608
chr1 226891656 226891666 HOXD13 JASPAR yes 35835609
chr1 226891656 226891671 FOXP1 JASPAR yes 35835610
chr1 226891660 226891666 TBP TRANSFAC yes 35835611
Genes associated with rs555841817[chr1:226891661], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More