EnhancerDB
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  3. rs556028467[chr17:57834999]
Enhancers that have rs556028467[chr17:57834999]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 57820705 57849586 enh4505
Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Blood (OCI-LY7) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs556028467[chr17:57834999]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 57832261 57836729 ZNF143 GTRD no Epithelial (MCF-7) 21775326
chr17 57832261 57836729 ZNF143 GTRD no Epithelial (MCF-7) 108276469
chr17 57832261 57836729 ZNF143 GTRD no Epithelial (MCF-7) 108276470
chr17 57832296 57837977 ZNF143 GTRD no Epithelial (MCF-7) 21775327
chr17 57832296 57837977 ZNF143 GTRD no Epithelial (MCF-7) 108276471
chr17 57832296 57837977 ZNF143 GTRD no Epithelial (MCF-7) 108276472
chr17 57832296 57837977 ZNF143 GTRD no Epithelial (MCF-7) 108276473
chr17 57832524 57835015 ZNF143 GTRD no Epithelial (MCF-7) 21775332
chr17 57832524 57835015 ZNF143 GTRD no Epithelial (MCF-7) 108276479
chr17 57832536 57836677 ZNF143 GTRD no Epithelial (MCF-7) 21775333
chr17 57832536 57836677 ZNF143 GTRD no Epithelial (MCF-7) 108276480
chr17 57832688 57835468 ZBTB33 GTRD no Lung (A549) 108276487
chr17 57832802 57835376 AR GTRD no Prostate (PC-3) 21775345
chr17 57832802 57835376 AR GTRD no Prostate (PC-3) 108276498
chr17 57833062 57836110 ZNF143 GTRD no Epithelial (MCF-7) 21775378
chr17 57833062 57836110 ZNF143 GTRD no Epithelial (MCF-7) 108276538
chr17 57833252 57836201 ZNF143 GTRD no Epithelial (MCF-7) 21775397
chr17 57833252 57836201 ZNF143 GTRD no Epithelial (MCF-7) 108276567
chr17 57833292 57836124 ZNF143 GTRD no Epithelial (MCF-7) 21775405
chr17 57833292 57836124 ZNF143 GTRD no Epithelial (MCF-7) 108276579
chr17 57834999 57835015 SOX8 JASPAR yes 55078071
Genes associated with rs556028467[chr17:57834999], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More